[spoilers for JP/JW movies out so far, as well as for Camp Cretaceous, and a tiny bit for the novels]
Most of the animals in JP/W movies are only ever referred to by their genus name in canon, with a couple of exceptions.
Dr. Burke identifies the Compies in The Lost World movie as "Compsognathus triassicus". The name is a combination of two different dinosaurs: Compsognathus longipes, which lived in the Late Jurassic, and Procompsognathus triassicus, which as the species name implies lived in the Triassic. The Compies are anatomically more based on the former, as its anatomy is better understood, with more fossil material having been found. The latter is what the Compies in the Jurassic Park novels are supposed to be, though, and that's the Compy Eberhard Fraas (not sure if the different spelling is just my subtitles) named in 1913, so they seem to have been combined into one animal in the fictional universe the Jurassic Park/World movies take place in (which differs enough from the novels they started out as based on, that those are probably two distinct fictional universes. Unless otherwise specified I'll mean just the movieverse in this post from now on when referring to "JP/W universe").
For the most part I can assume that the Mesozoic animals the JP/W animals are cloned from are called the same things in the JP/W universe as they are in real life. Another exception to that, besides the Compies, would have to be Velociraptor.
In the JP/W universe, this animal was apparently discovered and named "Velociraptor" well before the 1990's, it was an extremely social and intelligent pack hunter, at least the height of an average adult human at its adult size, and lived somewhere around today's Montana, USA. Matching it to any real life (at least currently known) dromaeosaurid is not going to be an exact fit. Dakotaraptor, for example, was both about the right size and lived in about the right area, but was discovered in 2015, and JP/W Velociraptors' behavior probably differs quite a bit from any real life dromaeosaurid no matter how much they have in common with them otherwise, so I think it can just be considered to be a completely fictional dromaeosaurid inspired by some real ones. Maybe in the JP/W universe, it takes the place of one or all of its somewhat-counterparts in at least some ways (maybe in that universe our Velociraptor mongoliensis is known as Ovoraptor djadochtari, maybe in that universe it was this animal that played Deinonychus' role in the dinosaur renaissance, maybe in that universe it was this animal that shared habitat with T. rex, giving some fun extra context for present-day raptor-rex interactions).
I've seen fans call them "nublarensis" or "sornaensis" a lot, for the islands they were cloned on, with -ensis in a scientific name indicating the organism is named after a location. The Mesozoic Velociraptor can't have been called that, though, and for its species name, I propose just keeping "antirrhopus". It translates to counterbalancing, and refers to how Deinonychus brought into the "tail-dragging lizards vs. active, warm-blooded birdies" debate a dinosaur that apparently used its tail as counterweight, tipping the scales (hah) in favor of the birdier side. If in this universe it was the animal referred to as Velociraptor that had this honor, it should get the name, too. Deinonychus does exist as its own animal in the JP/W universe, and animals from different genera can share a species name (for example: Velociraptor mongoliensis and Psittacosaurus mongoliensis, both from Mongolia), but this one's kind of special, so maybe it should go to just one of the two. Perhaps JP/W universe's Deinonychus can be Deinonychus agilis - that does still evoke the idea of an active hunter, and yes it's kind of a consolation prize, but better than nothing. Feels unfair, but I didn't make the JP/W canon, I only try to make sense of it.
So are the clones seen in the movies Velociraptor nublarensis or V. sornaensis, then (probably nublarensis out of the two of them, since that's the island they were meant to be showcased on, and Site B was secret)? Since Rexy isn't a Tyrannosaurus nublarensis, I don't think so, though maybe they could all be new subspecies instead of new species: Velociraptor antirrhopus nublarensis, and Tyrannosaurus rex nublarensis. Maybe if Dr. Wu or whoever is the most responsible for dinosaurs still being cloned on Isla Sorna after the events of JP1 wanted to consider the JP3 raptors enough of a new and improved version to be distinct from the JP1-2 raptors, he could have named them Velociraptor antirrhopus sornaensis, but the different raptor versions on Sorna could still have mingled quite a bit on their own, so considering there aren't all that many of them all together to begin with, not sure there's much point to naming multiple subspecies among them.
Ahem. Anyway.
And as I've understood, an Indoraptor is a hybrid of Indominus rex and Velociraptor, while Indominus rex is already a Velociraptor hybrid. Wouldn't that mean Indoraptors can be considered to just be Indominus rexes with higher Velociraptor content?
So, what do they have?
While I disagree with Dr. Grant's attitude at the beginning of the third movie about how there's nothing useful to be learned about Mesozoic dinosaurs by studying the clones (also he forgot about birds in that speech - real dinosaurs are not all extinct, come on now, you knew that in the first movie!), he is correct in that the animals InGen created are not just Mesozoic dinosaurs brought to the modern world exactly as they were (which if you look at the raptors should be pretty obvious these days: at least as far as I'm concerned, the Mesozoic Velociraptor was fully feathered in the JP/W universe, too, like dromaeosaurids were in real life). All of the JP/W dinos and other prehistoric animals are lab-made hybrids with modern animals, and don't represent prehistoric life completely accurately even in-universe.
But they exist now, in that universe, and they're something. I'd love to see more of in-universe scientists arguing about wtf that is.
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